| "Fuzzy" PubMed Matching
(Updated 09-09-05)
Recently, we have learned that PubMed matching is not quite as exact as we
previously thought. After corresponding with the team at NLM, we want to
share some information about cases where PubMed matching will link even
though the information in a reference is not exactly the same as the PubMed
record. The following information comes directly from NLM:
"We do allow a little fuzziness or forgiveness for the volume
and issue indexes because unfortunately these data are frequently messy. Here
are a few examples:
"If the citation only includes a volume and no issue the volume is also
indexed in issue.
"If the citation only includes an issue and no volume the issue is indexed
in the volume field as well.
"Citations with volume with suppl, part, edition, etc. include an index to
the single digit as well.
"Citations with an issue with parts but no volume, the issue is also indexed
in volume."
What this means is that in some cases, even if information isn't provided
correctly, the reference will still link on PubMed. For example, in the following
reference:
Banit DM, Kaufer H, Hartford JM. Intraoperative frozen section analysis
in revision total joint arthroplasty. Clin Orthop Relat Res. 2002; (401):230-238
401 is the issue number, not the volume number (Clin Orthop Relat Res uses
only issue numbers and does not assign volume numbers). Note that in the latest
eXtyles® code, this reference will correctly parse, treating the 401 as an issue
number.
However, if this reference were submitted by the author as:
Banit DM, Kaufer H, Hartford JM. Intraoperative frozen section analysis
in revision total joint arthroplasty. Clin Orthop Relat Res. 2002; 401:230-238
eXtyles treats 401 as the volume number. In this situation, given the rules
above, PubMed will still create the link.
A few other examples may be helpful. For example, PubMed will link the following
reference, even though the correct date is "1998-1999", not "1998":
Marmor MF, Zrenner E. Standard for clinical electroretinography (1999 update):
International Society for Clinical Electrophysiology of Vision. Doc Ophthalmol.
1998;97:143-156.
In fact, PubMed will link the reference in either case. And in one more example,
which illustrates how the system is not as flexible as one might expect, PubMed
will link:
Lieberman JR, Daluiski A, Stevenson S, et al: The effect of regional gene
therapy with bone morphogenetic protein-2-producing bone-marrow cells on repair
of segmental femoral defects in rats. J Bone Joint Surg 1999;81-A:905-917.
where "81-A" is the correct volume number; PubMed will also link "81". However,
PubMed does not link "81A" where the hyphen is not included.
So what does this all mean? If your goal is to have references that are accurate
enough to link, then eXtyles PubMed Checking should ensure that references will link
correctly when they appear online. However, you should be aware that in some cases
PubMed validation by eXtyles does not ensure that the reference exactly matches the
original printed article.
Please feel free to contact Inera if you have questions.
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